Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMANRKIVVALGGNAILSSDPSAKAQQ--EALVETAKHLVKLIKNGDDLIITHGNGPQVGNLLLQHLASDSEKNPAFPLDSLVAMTEGSIGFWLKNALQNALLDEGIEKNVASVVTQVVVDKNDPAFVNLSKPIGPFYSEEEAK--AEAEKSGATFKEDAGRGWRKVVASPKP-------VDIKEIETIRTLLNNGQVVVAAGGG-GIPVVKENNGHLTGVEAVIDKDFASQRLAELVDADLFIVLTGVDYVFVNYNKPNQEKLEHVNVAQLEEYIKQDQFAPGSMLPKVEAAIAFVNGRPEGKAVITSLENLGALIESESGTIIEKG
4JZ8 Chain:D ((3-316))SAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAA-GVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYT-EQEAKDLMAANPGKILRED--AGR-----GWRVVVPSPRPLEIVEYGVIKTLID-NNVLVICTNGGGIPCKRE-NKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-N----ERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQ-ATGKMSIITSLSTAVDALNGKCGTRIIK-


General information:
TITO was launched using:
RESULT:

Template: 4JZ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1636 28302 17.30 95.29
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain D : 0.79

3D Compatibility (PKB) : 17.30
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.558

(partial model without unconserved sides chains):
PDB file : Tito_4JZ8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4JZ8-query.scw
PDB file : Tito_Scwrl_4JZ8.pdb: