Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLELDQDGHLVDYTIWNPEVAQELAKSLDL-ELTDWHFEVLAAVRQFYQQFGHSPATRPLIK---FLMKTVSPDINNAVLQQKFNTGLVARHLSRLAGIPKPANCL
2V4J Chain:C ((10-105))-SFEVDEDGFLLRFDDWCPEWVEYVKESEGISDISPDHQKIIDFLQDYYKKNGIAPMVRILSKNTGFKLKEV---------YELFPSG-PGKGACKMAGLPKPTGCV


General information:
TITO was launched using:
RESULT:

Template: 2V4J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 356 -19089 -53.62 -207.49
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain C : 0.73

3D Compatibility (PKB) : -53.62
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.641

(partial model without unconserved sides chains):
PDB file : Tito_2V4J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2V4J-query.scw
PDB file : Tito_Scwrl_2V4J.pdb: