Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPGRSCVALVLLAAAVSCAVAQHAPPWTEDCRKSTYPPSGPTYRGAVPWYTINLDLPPYKRWHELMLDKAPVLKVIVNSLKNMINTFVPSGKIMQVVDEKLPGLLGNFPGPFEEEMKGIAAVTDIPLGEIISFNIFYELFTICTSIVAEDKKGHLIHGRNMDFGVFLGWNINNDTWVITEQLKPLTVNLDFQRNNKTVFKASSFA--GYVGMLTGFKPGLFSLTLNERFSINGGYLGILEWILGKKDVMWIGFLTRTVLENSTSYEEAKNLLTKTKI----------LAPAYFILGGNQSGEGCVITRDRKESLDVYELDAKQGRWYVVQTNYDR----------WKH----------------------------P--FFLDDRRTPAKMCLNRTSQ---ENISFETMYDVLSTK--P--V------LNKLTVYTTLIDVTKGQFETYLRDCPDPCIGW
2BJF Chain:A ((2-295))----------------------------------------------------------------------------------------------------------------------------------------------CTGLALETKDGLHLFGRNMDIEYSFNQSI----IFIPRNFKCVNKSNKKELTTKYAVLGMGTIFDDYPTFADGMNEKGLGCAGLNFPVY-VSY---SKEDIEGKTNIPVYNFLLWVLANFSSVEEVKEALKNANIVDIPISENIPNTTLHWMIS-DITGKSIVVEQTKEKL-NVFD------NNIGVLTNSPTFDWHVANLNQYVGLRYNQVPEFKLGDQSLTALGQGTGLVGLPGDFTPASRFIRVAFLRDAMIKNDKDSIDLIEFFHILNNVAMVRGSTRTVEEKSDLTQYTSCMCLEKGIYYYNTYE--------


General information:
TITO was launched using:
RESULT:

Template: 2BJF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1119 -6081 -5.43 -26.55
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain A : 0.58

3D Compatibility (PKB) : -5.43
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.58
QMean score : 0.403

(partial model without unconserved sides chains):
PDB file : Tito_2BJF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2BJF-query.scw
PDB file : Tito_Scwrl_2BJF.pdb: