Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPKTLTEKLNAIKATGKGIFVPYIMAGDHEKGLDGLGETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQAL---VETLKTIETEIPLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLADTDIALIPLVSLTTGIERQKELIEGAEGFVYAVAINGVTGKSGNYRADLDKHLAQLHQVADIPVLTGFGVSSQADLERFNAVSDGVIVGSKIVKALHQGEPIQDFIRQAVAYQK
5K9X Chain:A ((7-243))----IDKTLEKLKANRKKMLSPYITAGDPYPEL--TVSLMHQLVKSGADVLELGIPFSD---EGPVIQRAMERALAHSIHCDDVLNMVRQFRKTDTETPVILMGYLNPIEQYGYDLFAQQAVEAGVDGTILVDLPPEEADGVSRVWQKHGLYSIYLCSPTTSAERMNYINQHANGYLYYVSL-------ALKLPELKAQYLQRKAQSKLPLMVGFGIKTPEMAAQVAEFADGVIVGAALINEI------------------


General information:
TITO was launched using:
RESULT:

Template: 5K9X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1136 -120100 -105.72 -536.16
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -105.72
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.617

(partial model without unconserved sides chains):
PDB file : Tito_5K9X.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5K9X-query.scw
PDB file : Tito_Scwrl_5K9X.pdb: