Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKRIIQSVLSVSVLASMMSMAFAAQNEQEQAEQTLEKPAEPVKLETIFVTAE--EQVKQSL--GVSVITKEDLAKLPVRNDISDYVRRMPGVNLTGNSATGQRGNNRQIDIRGMGPENTLILVDGKPINSRNSVRYGWKGERDTRGDSNWVPAEAIESIEVLRGPAAARYGSGAAGGVVNIITKKVTNETHGSVEFYTSQPEDSKEGSSNRVGFNVSG-PLIKDVLSYRLYGNYNKTEADDVDINKSIGSTAAGREGVKNKDISGRLAWQATDQQTVLLDVSSSKQGNIYSGDSQLNANAEADAILSQLIGKETNTMYRDSY--ALTHEGDWSWGKSKLVAQYDKTHNKRLPEGLAGSVEGKINSLDDKATSRLETLRFNGEANIPFEYYLPQVLTVGTEWVEDRFKDNVSTTQGKDSSGSGYGDQLAKGDRSKMESRIASAYIEDNLKVTDSTDVVLGL------------RFDDHSKSGSNWSPSLNITQKLNDNFTLKGGVAKAYKAPNMYQNAEGYLLSTNGNGCPANIESRCLLQGNGDLKPETSVNKELGIQFQRDIVNASLTWFRNDYKDKIVAGTHVVGTADGSSTNANTGAVTNTKWNILRWENTPKALIQGFEGSLGLDFGDIRWTNNFTYMMDSKDKQTGNPLSLVPIYTINSIFDYDITDQLDVNFVFTQYGRQKSRQFAENRLESGIGSGGANSALKPSTVKSYSTAGINVGYKFSDQISTRVGVSNLFDKQILRDSNSISQTYNEPGRAYYASLKYSF
1NQE Chain:A ((6-594))---------------------------------------------DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQ-STSVNDVLRRLPGVDITQNGGSGQLSS---IFIRGTNASHVLVLIDGVRLNLA-----GVSGSADL----SQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGW----------GSNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHG-----------------GFLSKTLYGALEHNFTDAWSGFV--------RGYGYDNRTN---------------DTRKLYSQSWDAGLRYNGELI--KSQLITSY--SHSKDY------NY----------AT-------------------LDEMKQYTVQWA-----NNVIVGHGSIGAGV---------DWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYGFY--------------------GNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHT-----------------------LKYYNEGKARIKGVEATANFDTGPLTHTVSYDY-VDARNAITDTPLLRRAKQQVKYQLDWQLYD-FDWGITYQYLGTRYDKDYSSYPYQT-VKMGGV------------SLWDLAVAYPVTSHLTVRGKIANLFDK----DYETV-YGYQTAGREYTLSGSYTF


General information:
TITO was launched using:
RESULT:

Template: 1NQE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 3197 161287 50.45 304.32
target 2D structure prediction score : 0.40
Monomeric hydrophicity matching model chain A : 0.71

3D Compatibility (PKB) : 50.45
2D Compatibility (Sec. Struct. Predict.) : 0.40
1D Compatibility (Hydrophobicity) : 0.71
QMean score : 0.231

(partial model without unconserved sides chains):
PDB file : Tito_1NQE.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1NQE-query.scw
PDB file : Tito_Scwrl_1NQE.pdb: