Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRNEMMHRPVVKEELLDFMRTQQKKLPGELGKLEEEAHVAEVPVIPHETVVFLKFLLGQLQPERILEIGAAIGFSSSVMATTIGENAHVTTIDRFDVMIEKAKKNYERLGLTDKVTLLEGQAADILPELS--GPYDFIFMDSAKSKYIEFLPECLRLLRKGGVLMVDDIFQGGTIL--LPDEEIPRGKRAIHRKLNEFLRVVMDHPDLTSTILPLGDGVILMTKESETIEL
4PCL Chain:A ((56-224))----------------------------------------------------LQLLIRMAGIHSIVEVGTCVGFSAICMAHALPSKGHIYTIEKDYENVVTANQNIVNCKLEDKITVLHGEALAQLNTLKEMAPFDMIFIDANKSSYLAYLNWAKMYIRKGGLIVADNTFLFGSVFDEHPTEKVSSNAHASMRAFNDELA---NKEKYLSTIIPTSEGMMVSIK-------


General information:
TITO was launched using:
RESULT:

Template: 4PCL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 815 -53690 -65.88 -325.39
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -65.88
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.604

(partial model without unconserved sides chains):
PDB file : Tito_4PCL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4PCL-query.scw
PDB file : Tito_Scwrl_4PCL.pdb: