Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLIFLPGASGSTTFWHPLIEKLP-QQYRAKIIGYPSFGDTPESLEVKSFEDLTNYV---VNQI-HDESVIIAQSMGGIFAVTAALQKPQLVKGLVLIATSGGINLEP-----FN---VQDWR---------------EAYRQA---------------FLKY-------------PDWFITT----N--------ANYEEFLSDINIKTLLIWGDNDPVSPVQVGQYLNQKFENSTLYVVKGGDHQLAEKYADEVAVQIKNYLKGLM
3U1T Chain:B ((30-296))QPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGMGDSAKPDIEYRLQDHVAYMDGFIDALGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDLRTADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWLMASPIPKLLFHAEPGALAPKPVVDYLSENVPNLEVRFVGAGTHFLQEDHPHLIGQGIADWLRRN-


General information:
TITO was launched using:
RESULT:

Template: 3U1T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 950 -24277 -25.55 -121.99
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain B : 0.66

3D Compatibility (PKB) : -25.55
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.535

(partial model without unconserved sides chains):
PDB file : Tito_3U1T.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3U1T-query.scw
PDB file : Tito_Scwrl_3U1T.pdb: