Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPNCYAIHFYLECFMRKSLIWINLIIAMGALGFTNVVNAKDEYPLHMAAANDDIQLIKHILSQKTLIDARDETGSTALMVATRANNIHAAHMLIEAGADVNAKDNIQDSPYLYAGAQGYLKILRMTLMHGADLKSTNRYGGTALIPAAERGHVETVRTLIAAGVNINHVNNLGWTALLEAIILGNGKSNYQQIVALLLKAGANPNLADKDGITPLQHARTRGYREIEKLLLVAGAK
5JMN Chain:E ((18-165))-----------------------------------------------------------------------------LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRG-----HLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL------


General information:
TITO was launched using:
RESULT:

Template: 5JMN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain E - contact count / total energy / energy per contact / energy per residue : 812 -90090 -110.95 -608.72
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain E : 0.65

3D Compatibility (PKB) : -110.95
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.593

(partial model without unconserved sides chains):
PDB file : Tito_5JMN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5JMN-query.scw
PDB file : Tito_Scwrl_5JMN.pdb: