Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKQITPYEVIDGQLKGARQVPSPNFNQRPAGTEIQMIVVHNISLPPSQFGGGYIEQFFQNKLDWSVHPYFQTIEGMQVSTHLLILRT--GEVLQFVNFNDRAWHAGRSSYLAKIECNDYSIGIELEGSDD---------LPFEDLQYEVLTDVVTAIRQAYPEIKNHIAGHSDIAPGRKTDPGPYFKWQHFRQLLAQKKT
4BJ4 Chain:B ((12-163))----------------------TDYTSANQDSRVQFIVLHYTSTDLPHS----L-------------GIL---THGGVSAHYLIGDDEPATVYRLVDENRRAWHAGVSEWQGRTWLNATSIGIEIVNQGYRDTPQGRVWYPFSEAQIQALIPLLKDIAKRHGITPDRIIGHSDIAPGRKVDPGPLFPWKRLADA------


General information:
TITO was launched using:
RESULT:

Template: 4BJ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 626 -40547 -64.77 -287.57
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain B : 0.72

3D Compatibility (PKB) : -64.77
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.486

(partial model without unconserved sides chains):
PDB file : Tito_4BJ4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4BJ4-query.scw
PDB file : Tito_Scwrl_4BJ4.pdb: