Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMECSMNLADRDGFIWQDGQLIDWRDAKIHVLTHTLHYSMGVFEGVRAYETPKGTAIFRLQDHTKRLLNSAKIYQMKVPYDQAALEQAQIDVVRENKLASCYLRPLIWIGSEKLGIAATN-NTIHAAVAAWAWGAYLGDEAMAKGIR-----VKTSSFTHHHPNVTMCKAKASGNYTLSILAHQEVAHSGYDEAMLMDPQGYVCQGSGENVFLIKDGVLHTPDIAGGALDGITRQTVMTIAKDLGYEVVERRITRDEFYIADEAFFTGTAAEVTPIREYDDRQIGAGCRGPITTEIQKTFFDAVQGKKPKYEHWLTYVK
5CM0 Chain:C ((5-279))------------LVYMNGEFVPESQAKVSVFDHGFLYGDGVFEGIRAYNG----KVFKLYEHIDRLYDCARVIDLKIPLSKEEFAEAILETLRRNNLRDAYIRPIVTRGAGDLGLDPRKCPSPNVIIITKPW----------KGLKAITVAIRRNAIDSLPPNI------KSLNYLNNILAKIEANAKGGDEAIFLDHNGYISEGSGDNIFIVKNGTITTPPTLNN-LKGITRQVVIELINELEIPFREANIGLFDLYSADEIFVTGTAAEIAPVTYIDGRTVGNGKPGKVTKMLMEKF-------------------


General information:
TITO was launched using:
RESULT:

Template: 5CM0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1348 -46707 -34.65 -179.64
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain C : 0.76

3D Compatibility (PKB) : -34.65
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.439

(partial model without unconserved sides chains):
PDB file : Tito_5CM0.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5CM0-query.scw
PDB file : Tito_Scwrl_5CM0.pdb: