Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKFSPLCWIVPSIYVIMKEGFKIGKGVFMLKLGVIGTGAISH-HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVFFKS-SFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLAD---KQVLGADFNYAKYSSKMPDLLAGQTPNVFSDRFAGGALMDLGIYPLYAAVRLFGKANDATYHAQQL--DNSIDLNGDGILFYPDYQVHIKAGKNIT-SNLPCEIYTTDGTLTLNTIEHIR-SAIFT-----------DHQGN--------QVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWLYDAGSVHELLYTMRQTAGIRFEAEK
3KUX Chain:A ((2-347))-----------------------NAMADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---ADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVYFESHFDRYRP------EIRQRWREQ---GGGIWYDLGPHLLDQALQLFGLPETLNVDLGMLRPGSQSVDYFHAVLSYPGQRVVLHSTVLAAAETARYIVHGTQGSYIKFGVDPQEDRLKAGERLPQADWGYDMRDGIVTLSHDNVLTEKPLLTLPGNYPAYYAGIRDAIWGTA--PNPVPATEAIKVMELIELGIASDQQKKALP-


General information:
TITO was launched using:
RESULT:

Template: 3KUX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1598 -16560 -10.36 -52.57
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -10.36
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.470

(partial model without unconserved sides chains):
PDB file : Tito_3KUX.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3KUX-query.scw
PDB file : Tito_Scwrl_3KUX.pdb: