Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKLVLGGLSAAIMAVSGSVMAADFVAGKDYTVIANPGKV-EVPGKIEVREFFWYGCLHCFKLEPHMQTWLKQIPSDVRFVRTPAAMNKVWEQGARTYYTSEALGVRKRTHLPLFHAIQVNGQQIFDQASAAKFFTRYGVPEQKFNSTYNSFAVTAKVAESNKLAQQYQLTGVPAVVVNGKYVVQGED----GKVTQVLNYLIEKERKAK
4K2D Chain:A ((10-199))--------------------SPSAPVAGKDFEVMKSPQPVSAPAGKVEVIEFFWYGCPHCYEFEPTIEAWVKKQGDKIAFKRVPVAFRDDFVPHSKLFYALAALGVSEKVTPAVFNAIHKEKNYLLTPQAQADFLATQGVDKKKFLDAYNSFSVQGQVKQSAELLKNYNIDGVPTIVVQGKYKTGPAYTNSLEGTAQVLDFLVKQVQDKK


General information:
TITO was launched using:
RESULT:

Template: 4K2D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 836 -564 -0.67 -3.05
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -0.67
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.510

(partial model without unconserved sides chains):
PDB file : Tito_4K2D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4K2D-query.scw
PDB file : Tito_Scwrl_4K2D.pdb: