Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSWTFDNKKPIYLQIMEKIKLQIVSHTLEPNQQLPTVRELASEAGVNPNTIQRALSDLEREGFVYSKRTTG-RFVT-KDKELIAQSRKQLSEEELEHFVSSMTHFGYEKEELPGVVSDYIKGV-
2DU9 Chain:A ((3-118))--------VPLYKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGIGMFVSAQAPALIRERRDAAFAATYVAPLIDESIHLGFTRARIHALLDQVAESRG


General information:
TITO was launched using:
RESULT:

Template: 2DU9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 330 -28708 -86.99 -254.05
target 2D structure prediction score : 0.87
Monomeric hydrophicity matching model chain A : 0.71

3D Compatibility (PKB) : -86.99
2D Compatibility (Sec. Struct. Predict.) : 0.87
1D Compatibility (Hydrophobicity) : 0.71
QMean score : 0.625

(partial model without unconserved sides chains):
PDB file : Tito_2DU9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2DU9-query.scw
PDB file : Tito_Scwrl_2DU9.pdb: