Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKLTIRDIAEMAGVSVTTVSQILNNKGSRFSDKTRKKVLSIVNEHHYKPDYFASNVINRHSKTIGMIVPDVTDFFFSKLIEGVESYLNPLGYVIMLCNSRHSQENEIKYLQELSHRSVDGILLATPNILPEKYALDSGF-YQKMPIILIDRGLNR-RDNGRLIVKEYEGAYQAVSLFIENGHTKIGMLKETTGYYQLEERFNGYRHALKDHGLPFNG-KFVEHGELTVQGGYTASKKLLKH-KDITAIFCGNDAMAIGCYQAIDELGKKIPEDISVIGFDGLKLSEYMIPQLTTVQQPSFDIGFYAARFLIDTIEFPQRKVPNKVFETKLIIRESVKVLTKG
1JFT Chain:A ((1-335))--ATIKDVAKRANVSTTTVSHVINKT-RFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPL--LAMLEEYRHIPMVVMDAGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQ-GDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPF-


General information:
TITO was launched using:
RESULT:

Template: 1JFT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1795 -71986 -40.10 -217.48
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain A : 0.77

3D Compatibility (PKB) : -40.10
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.581

(partial model without unconserved sides chains):
PDB file : Tito_1JFT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1JFT-query.scw
PDB file : Tito_Scwrl_1JFT.pdb: