Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNGFEKRAQEKKKEILQAAFDLMNTDIGTAGVTMDKVAENAQVSKATIFKYFGSKEGLIYEVFFAFMNDLGQEAKALIAENLPFEETLIAMSENKIR-YLNRVNKQFYIDLMTYYTKKEKKEFSDAMDAYTQESFSIMLDLFHRGRKEGKVDLKYSDEFLILYFQAMVEGISKPEI----YAKLLPYTAEWTEVLIKGIAPKKK
5GP9 Chain:B ((7-193))----------KYDQIIDAAVQVIAE-HGYHQAQVSKIAKAAGVADGTIYLYFNNKEDVLISLFQEKMGRFVDKIRSQMNEATDVEEKLKILVNMHFKQLAAD--HKLAIVTQLELRQSNTELRLKI-NEVLKGYLNLLDELLMEGKEKGYFFQELDTRLARQMIFGTLDEVVTNWVMKDCKYDLTALVKPVHQLLLGGLRH---


General information:
TITO was launched using:
RESULT:

Template: 5GP9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 681 -63436 -93.15 -348.55
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain B : 0.72

3D Compatibility (PKB) : -93.15
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.498

(partial model without unconserved sides chains):
PDB file : Tito_5GP9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5GP9-query.scw
PDB file : Tito_Scwrl_5GP9.pdb: