Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIIKSERISLKHLLTVEALTDQEVMGLIRRGQEFKQGANWTPQ--KRQYFATNLFFENSTRTHKSFDVAEKKLGLEVIEFE--ASTSSVQKGETLYDTVLTMSALGVDVAVIRHGDENYYDELIQSKTIQCSIINGGDGSGQHPTQCLLDLMTIYEEFGHFEGLKVAIVGDITHSRVAKSNMQMLKRL-GAQVFFSGPR---------EWYDDEFEVYGHYMPLDELLDQVDVMMMLRVQHERHDGKESFSKEGYHQEHGLTVERAKKLQKHAIIMHPAPVNRDVELADSLVEGLQSRIVQQMSNGVFVRMAILEAVLNGKA
2IPO Chain:C ((7-305))----------KHIISINDLSRDDLNLVLATAAKLK--ANPQPELLKHKVIAS-CFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTY-VDAIVMRHPQEGAA-RLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMK---VLHPLP--RVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLN---


General information:
TITO was launched using:
RESULT:

Template: 2IPO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1501 40344 26.88 141.56
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain C : 0.77

3D Compatibility (PKB) : 26.88
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.408

(partial model without unconserved sides chains):
PDB file : Tito_2IPO.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2IPO-query.scw
PDB file : Tito_Scwrl_2IPO.pdb: