Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLIFLPGASGSTTFWHPLIEKLPQQYRAKIIGYPSFGDTPESL----EVKSFEDLTNYVVNQ---I-HDESVIIAQSMGGIFAVTAALQKPQLVKGLVLIATSGGINLEP--F----NV---Q-----------DWREAYRQAF----------LKYPDWFI-------------TTNANYEEFLSDINIKTLLIWGDNDPVSPVQVGQYLNQKFENSTLYVVKGGDHQLAEKYADEVAVQIKNYLKGLM
3QVM Chain:B ((29-278))KTVLLAHGFGCDQNMWRFMLPELEKQFTVIVFDYVGSGQSDLESFSTKRYSSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASHSSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENIPNSQLELIQAEGHCLHMTDAGLITPLLIHFIQNN-


General information:
TITO was launched using:
RESULT:

Template: 3QVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 927 -47002 -50.70 -236.19
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain B : 0.68

3D Compatibility (PKB) : -50.70
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.520

(partial model without unconserved sides chains):
PDB file : Tito_3QVM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3QVM-query.scw
PDB file : Tito_Scwrl_3QVM.pdb: