Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MPKIKPIKLVIIVVCIAIIAVLAWKFLKPKQQQPQYITAEVTRGDIENNVLATGTLDATKLISVGAQVSGQVKKMYVQLGDQVKQGQLIAQIDSTTQENSLKTSDANIKNLEAQRLQQVASLNEKQLEYRRQQQMYAQDATPRADLESAEAAYKTAQAQVKALDAQIESAKVTRSTAQTNIGYTRIVAPTDGTVVAIVTEEGQTVNANQSAPTIVKIAKLQNMTIKAQVSEADIMKVEKGQ-QVYFTTLGDE-TKRYATLRQIEPAPDSISSESNSTTSSTTSSAVYYNALFDVPNTD-----GKLRIDMTAQVYIVLNS----AKNALLVPSSALSSKQFSGQRKQQGQSADKASSTPSAERKHQGNGARLERLNLTPEQKQLIEQGKATLSVVRVLQADGTTKPTQILVGINNR-VNAQVLAGLKQGDQVVIADSSENSAASANSGNNRRRGPMGM 4L8J Chain:A ((7-325)) --------------------------------VRPVKTATVSSQSVI-LKDFSGMVEAVEYVKLAFRVSGQIINLPVVEGQRVKKGQLIAAIDPRDISLQYAADKA--------------AYETAAAQVERNKRLLGRQAISLQEYEISVANYQK--------------AKSAYELSTNNMRDTKLLAPFDGSIETRLVENYQRVNSGE---GIVRLVNTRKLRIKFTVPDDYLYLLRAKDATFKVEFDTYKGTVFNARLEEYLDISTDG---------------TGIPVTIIIDDAAFDRTIYDVKPGFTCNIRLASDIAPFIEEKLMNVPLSAVFGDSENK------------------------------------------------NTYVWIVK-DNKVNRREVTVYSPTGEANLLISKGLKPGETVVTAGVYQLVEGQRIK-----------

General information: TITO was launched using: RESULT: Template: 4L8J.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1114 -36077 -32.39 -117.51 target 2D structure prediction score : 0.54 Monomeric hydrophicity matching model chain A : 0.67 3D Compatibility (PKB) : -32.39 2D Compatibility (Sec. Struct. Predict.) : 0.54 1D Compatibility (Hydrophobicity) : 0.67 QMean score : 0.452

(partial model without unconserved sides chains): PDB file : Tito_4L8J.pdb: (Unconserved sides chains are recalculated) : Sequence: align-4L8J-query.scw PDB file : Tito_Scwrl_4L8J.pdb: