Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEGQLLVADIGVDATKTIITNLTERTARGDLIYS--------HSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDASESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK
1OKK Chain:A ((31-282))-------------------------------------------------------------------------------------------------LREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKE---ALGGEARLPVLKDRN----LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPF--------------


General information:
TITO was launched using:
RESULT:

Template: 1OKK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1214 53716 44.25 220.15
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : 44.25
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.538

(partial model without unconserved sides chains):
PDB file : Tito_1OKK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1OKK-query.scw
PDB file : Tito_Scwrl_1OKK.pdb: