Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIKLIRADQYTKMLWKNGAGFTLEIARSQ--GEADFEWRISMADVTTSGPFSLFPNKQRIISVLDGQGMVLHVDDLPAKKLKQGDIFAFHGESQVQSELVDGAIRDLNLIYDPAKFHARFQWLNEAAEQAFISSADLIFIFNQGDETEVNVDEH-SVQLAAHETLKIEKKSGVTSINFPKKQFKCCYIIELIQR
1YLL Chain:A ((3-195))ELRILRAVDYPRMP-----GSTEEIARDGGDGLDGFGWRLSIADVGESGGFSGFAGYQRIISVLEGGGMRLRVDGAESAPLRARQAFAFSGDSEVHCTLLDGAIRDFNLIYAPRRHRARLQWLRVEGELDWHGTASTLLLFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQGLQHWRLTAHEPAWVCAVELDS-


General information:
TITO was launched using:
RESULT:

Template: 1YLL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 968 -17774 -18.36 -96.07
target 2D structure prediction score : 0.47
Monomeric hydrophicity matching model chain A : 0.79

3D Compatibility (PKB) : -18.36
2D Compatibility (Sec. Struct. Predict.) : 0.47
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.464

(partial model without unconserved sides chains):
PDB file : Tito_1YLL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YLL-query.scw
PDB file : Tito_Scwrl_1YLL.pdb: