Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRKGGLDMLNLTHVTLKTRQVILQDADFTFKKGRIYGLLAINGSGKTTLFRAMSKLLPLSSGHIAVPPSLFYYESVEWLDGNLSGMDYLRLI------KNI-WKSDLNLRDEIA----YWEMADY-ISLPI----------RKYSLGMKQRLVIAMYFLSQAKCWLMDEITNGLDEYYRQKFFDRLA
3QF4 Chain:A ((339-522))--EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGL-


General information:
TITO was launched using:
RESULT:

Template: 3QF4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 660 -32826 -49.74 -202.63
target 2D structure prediction score : 0.49
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : -49.74
2D Compatibility (Sec. Struct. Predict.) : 0.49
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.234

(partial model without unconserved sides chains):
PDB file : Tito_3QF4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3QF4-query.scw
PDB file : Tito_Scwrl_3QF4.pdb: