Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMALTNEEILNAVAEKTVLELVELISAFEEKFNVSAAAVAVAAPAGGAAAAA----EEQSEFNVELTSFGANKVAVIKAVREATGLGLKEAKDLVE--GAPQ-VLKEGVSKEEGEELKKKLEEAGATVTLK
1DD4 Chain:A ((1-128))--MTIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKTEFDVVLKSFGQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK


General information:
TITO was launched using:
RESULT:

Template: 1DD4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 382 14005 36.66 115.74
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain A : 0.87

3D Compatibility (PKB) : 36.66
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.87
QMean score : 0.615

(partial model without unconserved sides chains):
PDB file : Tito_1DD4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1DD4-query.scw
PDB file : Tito_Scwrl_1DD4.pdb: