Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSMHSDQINPDSNENQDPNNLIDQFFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDS-REKMQAVYVDTPGMHK-KEVRAINKMMNRAAHSALRDVNLVLFVIDAHK-WTQNDDLVLDK-LKNADMPVILVINKADTFGDKREILPLIQE-RAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKTGRLKPACTYIDATIFVDRPGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKVKGGWSDDERALKSLGYSDI
3R9X Chain:A ((7-306))------------------------------------MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDAN---------PNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGYA--


General information:
TITO was launched using:
RESULT:

Template: 3R9X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1519 38657 25.45 131.04
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.81

3D Compatibility (PKB) : 25.45
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.572

(partial model without unconserved sides chains):
PDB file : Tito_3R9X.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3R9X-query.scw
PDB file : Tito_Scwrl_3R9X.pdb: