Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNFNQLQIALGTLVRKEVRRFLRIWPQTLLPPAITMSLYFVIFGNLVGSRIGEMGGVSYMQFIVPGLIMM---AVITNSYANVSSSFFSVKFQKNIEELIMSPVPLHIILWGYVIGGICRGVLVGAIVTAMSMFFTDLFI--HNWFVTIYTVLITSVLFSLGGFINAVYAKSFDDISIIPTFVLTPLTYL-GGVFYAISALGPFWQKLSLINPIVYMVNAFRFGILGHSD-V-----------------------NVSFSLIIVTLCCAVLYGIAYYLLARGSGMRE
5DO7 Chain:C ((362-649))---PGVFSKLGVLLRRVTRNLVRNKL-AVITRLLQNLIMGLFLLFFVLRVRS--NVLKGAIQDRVGLLYQFVGATPYTGM-LNAVNLFPVLRAVSDQESQDGLYQKWQMMLAYALHVLPFSVVATMIFSSVCYWTLGLHPEVARFGYFSAALLAPHLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGVLVGSGFLRNIQEMPIPFKIISYFTFQKYCSEILVVNEFYGLNFTCGSMCAFTQGIQFIEKTCPGATSRFTMNFLILYSFIPALVILGIVVFKIRDHLI-


General information:
TITO was launched using:
RESULT:

Template: 5DO7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1149 -171163 -148.97 -687.40
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain C : 0.65

3D Compatibility (PKB) : -148.97
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.349

(partial model without unconserved sides chains):
PDB file : Tito_5DO7.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5DO7-query.scw
PDB file : Tito_Scwrl_5DO7.pdb: