Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKNKFRKIVGTIAILTASILLSACGNSGSADDSTGYVGIAMPTKSAERWIADGNNMVSELEKLGYKTDLQYGEDKVENQVAQIENMITKGVDTLVIASIDGSALTDVLAKAKEADIKVIAYDRLLMNSENVDYYATFDNFGVGVSQAAYIEEHLGLKEGKGPFTIELFGGSPDDNNALINYNGVMSVLQPYMDNGQLVVPSGQTSFSQIATLRWDGSTAQARMDNLLSANYTDQTLDAVLSPYDPISLGIISSLKGVGYGSESKPLPVITGQDATVAGVKSIIAGEQTQTIFKDTRILAKNTIEMIKAISDGEEVPVNDTETYDNGVKTVPTYLANTVSVDKDNYQAELIDTDYYKESDLKN
3MA0 Chain:A ((5-307))------------------------------------IGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMI-NDADIDFYISFDNEKVGELQAKALVDIV----PQGNYF--LMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDG------WLPENALKIMENALTAN--NNKIDAVVASNDATAGGAIQALSAQGLSGKV----AISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQE-PKADT-TLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESEL--


General information:
TITO was launched using:
RESULT:

Template: 3MA0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1824 -127277 -69.78 -420.06
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : -69.78
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.491

(partial model without unconserved sides chains):
PDB file : Tito_3MA0.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3MA0-query.scw
PDB file : Tito_Scwrl_3MA0.pdb: