Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSAYQLPTVWQDEASNQGAFTGLNRPTAGARFEQNLPKGEQAFQLYSLGTPNGVKVTILLEELLEAGFKEAAYDLYKIAIMDGDQFGSDFVKLNPNSKIPALLDQSG--TEDVRVFESAHILLYLAEKFGAFLPSNPVEKVEVLNWLFWQAGAAPFLGGGFGHFFNY--APEKLEYPINRFTMEVKRQLDLLDKELAQKPYIAGNDYTIADIAIWSWYGQLVQGNLYQGSAKFLDASSYQNLVKWAEKIANRPAVKRGLEVTYTEIK
4NHZ Chain:H ((19-255))------------------YFQSMSDLSSFPITKRWPAQHSDRIQLYSLPTPNGVKVSIMLEET------GLPYEPHAIDFGKDHQKTPEFLSLNPNGKIPAIIDPNGPGDKPLGLFESGAILQYLAEKTGQFLPADPARRWQTLQWLHFQMGGIGPMFGQLGFFHKFAGREYEDKRPLQRYVAESKRLLGVLEARLDGRQWIMDADYTIADIATLGWVRNLIGFYGA---RELVAFDELTHVPAWLERGLARPAVQRGLEIPKR---


General information:
TITO was launched using:
RESULT:

Template: 4NHZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain H - contact count / total energy / energy per contact / energy per residue : 1137 -25127 -22.10 -107.84
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain H : 0.77

3D Compatibility (PKB) : -22.10
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.398

(partial model without unconserved sides chains):
PDB file : Tito_4NHZ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4NHZ-query.scw
PDB file : Tito_Scwrl_4NHZ.pdb: