Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNFDRNTPIAFLGIGLMGNRMASHLIQAGFQVAVWNRTASACEELID-IGAHALDLS-NIGQYPLILTCLADDKAVQAVFDQIQTNLKAGQVIVDFSSLSVAATKALAQAAALQDVIWIDSPVSGGTAGAEQGTLVIFAGGDAQTIEALSPVYNVLSQRVTRMGDTGTGQATKICNQLIVAANSALIAEAVALADRAGVDTTLLAPALAGGFADSKPFQILA-PRMATHTFEPVQWKVQTLSKDLNNAVTLANNVNLDIPVAQKALLQLQTHQKNSFAEKDLATMIQVVEQ
2CVZ Chain:C ((1-282))-----MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEA-VPLERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKT-FALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER


General information:
TITO was launched using:
RESULT:

Template: 2CVZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1513 -21928 -14.49 -78.59
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain C : 0.75

3D Compatibility (PKB) : -14.49
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.539

(partial model without unconserved sides chains):
PDB file : Tito_2CVZ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2CVZ-query.scw
PDB file : Tito_Scwrl_2CVZ.pdb: