Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKIGIIGAMEEEVKILRENLSEPLSWER---AGALFISGSLGNHEVIVVRSGIGKVLASITTSLLIQQYGVNMVINTGSAGGIGEGLQVGDIVISDKVAYFDADATGFGYNPGQLPGMPLYYEASTYLRSEMVKAAKATNLNAKEGLIVTGDTFVDSPDKIKEILTNFPEALACEMEGAAVGQTARQFNIPFLIVRAMSDTADHSATQSFDEFIEDAGKRSAEMVIEFVKHLV
4YO8 Chain:B ((18-245))-KIGILGAMREEITPILELFG--VDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKER-KEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL-


General information:
TITO was launched using:
RESULT:

Template: 4YO8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1351 -13795 -10.21 -61.31
target 2D structure prediction score : 0.72
Monomeric hydrophicity matching model chain B : 0.80

3D Compatibility (PKB) : -10.21
2D Compatibility (Sec. Struct. Predict.) : 0.72
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.572

(partial model without unconserved sides chains):
PDB file : Tito_4YO8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YO8-query.scw
PDB file : Tito_Scwrl_4YO8.pdb: