Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKERFQMKKYQWGIV-GLGTIAHEFAESFNQ-ETSELTAVASRTSEKAENFAHRYNIP---KAYGSYQEMLDDAEIDIVYIAVPNRQHIDHILAALEAGKHVLCEKAITM-NKKELADAMRLAEEKNLIL-AEA-MTIFNMPLYQQLRSIM-DTGKLGALKMIQAPFGSYKEPDPKN---RFFNPELAGGALLDIGTYAVSFARFFLSSQP--EVVAST-MVPFETGVDEQSVTILRNKENELAAVSLTFQAKMP-KVGIVAFENGYVTIADYPRADRAEILFTDGT------------KEFIESGNTSEAMNYEIK-NMVHMIEGDLPNRSLFLTKDVIEILDQMQVLWKNM----------
1YDW Chain:B ((6-360))--------QIRIGV-MGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVA-MNVTEFDKIVDACEANGVQIMDGTMWV--HNPRTALLKEFLSDSERFGQLKTVQSCFSFAGDEDFLKNDIRVKPGLDGLGALGDAGWYAIRATLLANNFELPKTVTAFPGAVLNEAGVILSCGASLSWEDGRTATIYCSFLANLTMEITAIG-TKGTLRVHDFIIPYKETEASFTTSTKAWFNDLVTAWVSPPSEHTVKTELPQEACMVREFAIKNNGAKPDGYWPSISRKTQLVVDAVKESVDKNYQQISLS


General information:
TITO was launched using:
RESULT:

Template: 1YDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1673 47921 28.64 154.09
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain B : 0.68

3D Compatibility (PKB) : 28.64
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.494

(partial model without unconserved sides chains):
PDB file : Tito_1YDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YDW-query.scw
PDB file : Tito_Scwrl_1YDW.pdb: