Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEAGAFGYIRGGSEDEWTMKENTTSFNTKKIMPRILRGIDSADLHTSVFGIELDTPIIQAPSAAQGLAHE-KGEADTAKGVAAAGSIFS--ISTYANTTIKDAADAAPGAPQ--FFQLYMSKDDRFNEFILNKAVEAGAKAIILTADSTLGGYREEDVINQFQFPLPMPNLAAYSEQSASGNGEGKGIAEIYAAAKQGLTPDDIKTIKEITHLPVIVKGIQSPEDAVIAISAGADGIWVSNHGGRQLDGGPASFEVLPKIAEVVNKR-----VPVIFDSGVRRGEHVFKALASGADLVAIGRPVIYGLNLVGQKE
1LDC Chain:B ((140-444))----AWAFYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF-----------------------------IDPS---LTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGR--


General information:
TITO was launched using:
RESULT:

Template: 1LDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1438 43275 30.09 162.08
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain B : 0.80

3D Compatibility (PKB) : 30.09
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.390

(partial model without unconserved sides chains):
PDB file : Tito_1LDC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1LDC-query.scw
PDB file : Tito_Scwrl_1LDC.pdb: