Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKNMVSVAVLFAFVFSLFSVGSLANADEKTPSDEFRVGMEAGYAPFNWSQQTDENNALPIQGQNSYAGGYDVQIAKKVADGLGKKLVIVQTKWDGLAPALQSGKIDAIIAGMSPTAERRKEIDFTDPYYESQLVVVVQKDSKYAKAKSLADLSGAKITAQLNTFHYTVIDQIPDVQKQQAMDNFSAMRTALASGMIDGYVSERPEGVTATSVNKDLEMLEFSGADGFQTNPEDVQISVGMRKGDPDI-QKVNQILSGISN-DERTKIMDQAVKDQPAATDSEEKPGIISDFTTIWKQYGNMFLRGAGLTLFIALIGTVVGTTLGLLIGVFRSVPESGNALTRFFQKIGNALLSIYVEVFRGTPMMVQAMVIFYGLALAFGISLNRTIAALFIVSLNTGAYMTEIVRGGIFAVDEGQFEAAQAIGMTHGQTMRKVVIPQVLRNILPATGNEFVINIKDTAVLSVIGVADLFFQGNSASGANFQFFQTFTIVGIIYLVMTFTITRILRAVEKKIDGPSAYTKLEEIDNSNLQE
4YMX Chain:B ((37-259))---------------------------------GVIVMGTSADFPPFEFHKVE---------GGKDEIVGFDIDIANAIAKKLGVKLEIKDMDFKGLIPALQAGRVDMVIAGMTPTAERKKSVDFSDLYYDSRQVVVVKNDSPIS---KFDDLKVKTIAVQIGTTSEEAAKKIPNVKL-KQLNRVSDEFMDLQNGRCDAIVVEDTVAKAYLKEYKDMKILYM-DEIN----NVENGSAVAVAKGNKSLLDVVNEVIKELKQSGEYDKLVDKWFK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4YMX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1197 -77294 -64.57 -349.75
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain B : 0.57

3D Compatibility (PKB) : -64.57
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.57
QMean score : 0.492

(partial model without unconserved sides chains):
PDB file : Tito_4YMX.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YMX-query.scw
PDB file : Tito_Scwrl_4YMX.pdb: