Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDRRTDMRAVVQRVSKAAVSVDQQEIGK-------IGYGLLVLLGIHETDTQKDVDYLVKKIAQMRIFEDEQGKMNISVEDVGGQILSISQFTLFADTKKGNRPSFVEAARPETAIPLYESFNEGIRSR--GITVATGQFGADMSVSLVNDGPVTIIIDSKNK
3KO4 Chain:B ((1-157))------MRVVIQRVKGAILSVR------ELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDT---


General information:
TITO was launched using:
RESULT:

Template: 3KO4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 622 2488 4.00 17.90
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain B : 0.80

3D Compatibility (PKB) : 4.00
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.574

(partial model without unconserved sides chains):
PDB file : Tito_3KO4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3KO4-query.scw
PDB file : Tito_Scwrl_3KO4.pdb: