Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMKYNNLNEFLNYVQARDPHQPEFLQAVEEVMTSLWPFIEKNPEYAEQGLLERLVEPERVIQFRVSWMDDQGQTQVNRAFRVQYNSAIGPFKGGMRFHPSVNLSILKFLGFEQTFKNSLTTLPMGGGKGGSDFNPKGKSDAEIMRFCQALMIELYRHLGPNTDIPAGDIGVGAREVGYMAGMMKKLSN-DTACVFTGKGISFGGSLMRPEATGYGTVYFAEEMLKTRGQSFAGKTVSISGSGNVAQYAAEKAMFLGAKVVTLSDSNGTVYLKNGFTDELLAEVMELKNIQRGRISEFASKH-GFEYFEGKTPWHIPVDIALPCATQNELTGEDAKMLIANGVICVAEGANMPSTLEAVEHFIEAKILYAPGKASNAGGVATSGLEMSQNSIRLGWTHAEVDERLHAIMKDIHANCVRYGTKEDGTVNYVDGANIAGFVKVADAMLAQGIY
5GUD Chain:D ((28-471))--DEQVSNYYDMLLKRNAGEPEFHQAVAEVLESLKIVLEKDPHYADYGLIQRLCEPERQLIFRVPWVDDQGQVHVNRGFRVQFNSALGPYKGGLRFHPSVNLGIVKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGKSDLEIMRFCQSFMTELHRHIGEYRDVPAGDIGVGGREIGYLFGHYRRMANQHESGVLTGKGLTWGGSLVRTEATGYGCVYFVSEMIKAKGESISGQKIIVSGSGNVATYAIEKAQELGATVIGFSDSSGWVHTPNGVDVAK---LREIKEVRRARVSVYADEIEGATYHTDGSIWDLKCDIALPCATQNELNGENAKTLADNGCRFVAEGANMPSTPEAVEVFRERDIRFGPGKAANAGGVATSALEMQQNASRDSWSFEYTDERLQVIMKNIFKTCAETAAEYGHENDYVVGANIAGFKKVADAMLAQGVI


General information:
TITO was launched using:
RESULT:

Template: 5GUD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 2617 -38853 -14.85 -87.90
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain D : 0.86

3D Compatibility (PKB) : -14.85
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.86
QMean score : 0.583

(partial model without unconserved sides chains):
PDB file : Tito_5GUD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5GUD-query.scw
PDB file : Tito_Scwrl_5GUD.pdb: