Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNGFEKRAQEKKKEILQAAFDLMNTDIGTAGVTMDKVAENAQVSKATIFKYFGSKEGLIYEVFFAFMNDLGQEAKALIAENLPFEETLIAMSENKIRY-LNRV---NKQFYIDLMTYYTKKEKKEFSDAMDAYTQESFSIMLDLFHRGRKEGKVDLKYSDEFLILYFQAMVEGISKPEI---YAKLLPYTAEWTEVLIKGIAPKKK
3EUP Chain:B ((4-203))--KELSKSDRTRQFIIESTAPVFNV-KGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLVYSSMYNDADGSLFPVGGCPLLNTTIEA-DDTHDALRKKA-GEAILSWKKNLVTIIKKGIQAKEFRPDTDVTKIAFSMIALVEGAILIHRATKNRAYSDYVFESLEDLIAGIEVKK-


General information:
TITO was launched using:
RESULT:

Template: 3EUP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 746 -49391 -66.21 -255.91
target 2D structure prediction score : 0.72
Monomeric hydrophicity matching model chain B : 0.66

3D Compatibility (PKB) : -66.21
2D Compatibility (Sec. Struct. Predict.) : 0.72
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.446

(partial model without unconserved sides chains):
PDB file : Tito_3EUP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3EUP-query.scw
PDB file : Tito_Scwrl_3EUP.pdb: