Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIMATYE-TFAAVYDAVMDD---SLYDKWTNFSLRHLPKTKERKKLLELACGTGIQSVRFSQAGFDVTGLDLSADMLKIAEKRATSAKQKIAFIEGNMLNLSKAGKYDFVTCYSDSICYMQDEVEVGDVFKDVYNALNEEGVFIFDVHSTYQTDEVFPGYSYHENAE--DFAMLWDTYEDEVPHSIVHELTFFIKEADGSFSRHDEVHEERTYEILTYDILLEQAGFKSFKLYADFEDKEPTETSTRWFFVAQK--
4OQD Chain:A ((12-250))---ADYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPD----AVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW--WFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFM--------PGGPSGRGLFTGLPGA


General information:
TITO was launched using:
RESULT:

Template: 4OQD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1210 -12357 -10.21 -53.49
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -10.21
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.301

(partial model without unconserved sides chains):
PDB file : Tito_4OQD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4OQD-query.scw
PDB file : Tito_Scwrl_4OQD.pdb: