Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNKYFAEFLGTFWLVFGGCGSAVLAAAFPELGIGFAGVALAFGLTVLTGAYALGHISGGHFNPAVSVGLWVGGRFDVKDLIPYIVAQVVGATAAAFVLYIIAQGQAGF-SGVGGFAANGFGDLSPNKFGLGSAFIIEVVLTAFFLIIILGATDRRAPAGFAPIAIGLGLTLIHLISIPVTNTSVNPARSTGVAFFAETAALSQLWLFWVAPILGAVIGAIIYKVVAGDKD
2O9E Chain:A ((6-233))-RKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR-


General information:
TITO was launched using:
RESULT:

Template: 2O9E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1247 -137271 -110.08 -604.72
target 2D structure prediction score : 0.72
Monomeric hydrophicity matching model chain A : 0.93

3D Compatibility (PKB) : -110.08
2D Compatibility (Sec. Struct. Predict.) : 0.72
1D Compatibility (Hydrophobicity) : 0.93
QMean score : 0.367

(partial model without unconserved sides chains):
PDB file : Tito_2O9E.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2O9E-query.scw
PDB file : Tito_Scwrl_2O9E.pdb: