Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDTSKFNQFVRDIYQTNNFIPLHEPRFLGNEKKYVLDTIDSTFVSSVGAYVNDFESKIQHFTGCAKAIATVNGTAALHIALLLAGVKRDDIVITQALTFVATCNALSYIGAEPLFIDVSLKTMGLCPKALDTYLQENAFLDDQGVCKHTATNKRISAIVPMHTFGHPVEIDELQEVVTRWNIALVEDAAESLGSYYKGKHTGIFGLVSALSFNGNKVITTGGGGMVLCQDEE------------LGVRAKHITTTAKIPHPYEFYHDENGFNYRLPNLNAALGCAQMESLEGFLSKKRDLAHQYQNFFKDTDISFFVEPENCQSNYWLNAIICKNKTQ----RDLILDETNSNKVMTRPIWTLMTRLPMYENALQG-DLTNSLWLEERVVNIPSSVPLE
4OCA Chain:A ((8-362))----------------SDFLPFSRPAMGAEELAAVKTVLDSGWITT-GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIE-----------------AAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARG-TAIFSFHAIANITCAEGGIVVTDNPQFADKLRSLKFHGLG--------------AEVL---APGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLP------


General information:
TITO was launched using:
RESULT:

Template: 4OCA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1778 -136118 -76.56 -420.12
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -76.56
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.462

(partial model without unconserved sides chains):
PDB file : Tito_4OCA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4OCA-query.scw
PDB file : Tito_Scwrl_4OCA.pdb: