Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSTVPFVTCDLLDDNPEKDLQVVTPSMDGKSFKSYGARQTFGGQVVTVKCFEDNSRVKELLATDGTGKVLVVDGGASMRCALMGDMIAESAVKNNWNGVVIYGCVRDVDALATLDLGVHALAAIPQKSNRKGIGEVDIPLYFGGVTIQSGDFIYADNNGIVIAKEKLV
2PCN Chain:A ((21-157))-------------------------------FQSYGGKRMFSGPIATVDVFEDNVLVREALETVPPGTVLVVDGKGSRRVALLGDRLAQIACERGLAGVIIHGCIRDSAEIGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFGGVRWEPGAYVYADADGVVVANKDLL


General information:
TITO was launched using:
RESULT:

Template: 2PCN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 821 -116802 -142.27 -852.57
target 2D structure prediction score : 0.72
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : -142.27
2D Compatibility (Sec. Struct. Predict.) : 0.72
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.606

(partial model without unconserved sides chains):
PDB file : Tito_2PCN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2PCN-query.scw
PDB file : Tito_Scwrl_2PCN.pdb: