Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMCNVQLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDEYTPSIIIALKISQIFNETVESVFRLEEDE
2LYQ Chain:A ((4-66))-------NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE-


General information:
TITO was launched using:
RESULT:

Template: 2LYQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 229 -23151 -101.09 -367.47
target 2D structure prediction score : 0.51
Monomeric hydrophicity matching model chain A : 0.82

3D Compatibility (PKB) : -101.09
2D Compatibility (Sec. Struct. Predict.) : 0.51
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.660

(partial model without unconserved sides chains):
PDB file : Tito_2LYQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2LYQ-query.scw
PDB file : Tito_Scwrl_2LYQ.pdb: