Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKALPIAVAVVLGGAALVPVYYATQHPTTEVGHKADKNASPIQKISYVLGYEVAQQTPPELDTKAFVQGIHDVRNKQPSAYTQEDLKAAVAAYEKELQQKMQHQDKPEQAGTATDSADAQFLAENKTKAG---VKTTASGLQYIITKEGTGKQPTAQSIVKVHYEGRLINGQVFDSSYKRGQPVEFPL--NQVIPGWTEGLQLMKEGGKATFFIPSNLAYGPQELPG-IPANSTLIFDVELISVK
3UQA Chain:A ((69-209))----------------------------------------------------------------------------------------------------RIQADQTPED----LDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV-


General information:
TITO was launched using:
RESULT:

Template: 3UQA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 517 26225 50.73 194.26
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : 50.73
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.618

(partial model without unconserved sides chains):
PDB file : Tito_3UQA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3UQA-query.scw
PDB file : Tito_Scwrl_3UQA.pdb: