Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAYSEKVIDHYENPRNVGVLDKNSENVGTGMVGAPACGDVMRLQIQVNDNGVIEEARFKTYGCGSAIASSSLVTEWLKGKTLDEAQAIKNIDIATEL-ALPPVKVHCSVLAEDAIKAAIEDYRSKKSKA
4EB5 Chain:C ((2-123))--YSDKVFDHFQNPRNVGKIE-DADGVGT--VGNPVCGDLMTIYIKVKDN-RIEDIKFQTFGCAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDYFRKNGK-


General information:
TITO was launched using:
RESULT:

Template: 4EB5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 652 -42821 -65.68 -353.89
target 2D structure prediction score : 0.72
Monomeric hydrophicity matching model chain C : 0.83

3D Compatibility (PKB) : -65.68
2D Compatibility (Sec. Struct. Predict.) : 0.72
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.575

(partial model without unconserved sides chains):
PDB file : Tito_4EB5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4EB5-query.scw
PDB file : Tito_Scwrl_4EB5.pdb: