Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTRPDSKSMNYQLLKTFSRQPIQFGRFLARLLAGLVNTLKITRTSKSIELNLRIALPYLTPQQRIAITEKAVRNELTSYFEFLSIWGSSNSKNISRIHRIEGEHFFHEALAAKKGVVLIVPHFGTWEVMNAWCAQ----FTSMTILYKPVKNADADRFVREARSREQANLVPTDESGVRQIFKALKQGETTVILPDHTPNVGGDMVNYFGVPLASSNLSAKLIQKTKAKALFLYAIRNENDGFTIHI-EPMDEKIYEGTADDGTYVIHQAIEQLIYQYPEHYHWSYKRFKANPALDNIYNIDPTEALKIVDRLKAEALKTSTQPEPIQTSVM
5F2T Chain:A ((44-290))------------------GGPEQLRRNLARVVG-------------------------KPPADVPDDLIRASLASYARYWREAFRLPAMDHGRLGEQLDVIDIDHLWSALDAGRGAVLALPHSGNWDMAGVWLVQNYGPFTTVAERLKPESLYRRFVEYRESLGFEVLPLTGGERPPFEVLAERLTDNRPICLMAERDLTRSGVQVDFFGEATRMPAGPAKLAIETGA-ALFPVHCWFEGDGWGMRVYPELDTS--SGDVTAITQALADRFAANIATYPADWHMLQPQWIADL---------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5F2T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1200 -34073 -28.39 -140.80
target 2D structure prediction score : 0.72
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -28.39
2D Compatibility (Sec. Struct. Predict.) : 0.72
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.443

(partial model without unconserved sides chains):
PDB file : Tito_5F2T.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5F2T-query.scw
PDB file : Tito_Scwrl_5F2T.pdb: