Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRPTVLCFSGLDPSGGAGLQADIEAIGQSGAHAAIACTALTIQNSQQVFGSEATSKELLLAQANAVVGDLPIKCVKSGMLGTTDNIAALAEFLRAH--PDYQYVLDPVLVANSGGSLGDQATLVKAFVELIL-LATLITPNTVELRALTGVT-------DLDQATQKLFE-MGAKAVLVKGGHEDTPDFIKNSLYIDGE-LAASSTCPRLE-GEYHGSGCSLASFIAGRLALGDSLKIAVQHAETWLFGVLKNAETPVPNGQKIPKRF
3RM5 Chain:B ((22-291))-LPTVLSIAGTDPSGGAGIEADVKTITAHRCYAMTCITALNAQTPVKVYSINNTPKEVVFQTLESNLKDMKCNVIKTGMLTAA-AIEVLHEKLLQLGENRPKLVVDPVLVA---------KDIVSLITEKVAPFADILTPNIPECYKLLGEERKVNGLQDIFQIAKDLAKITKCSNILVKGGHI------TDVLFLGAEQKFIIFKGNFVNTTHTHGTGCTLASAIASNLARGYSLPQSVYGGIEYVQNAVAIGCD------------


General information:
TITO was launched using:
RESULT:

Template: 3RM5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1242 -75733 -60.98 -335.10
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain B : 0.74

3D Compatibility (PKB) : -60.98
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.530

(partial model without unconserved sides chains):
PDB file : Tito_3RM5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3RM5-query.scw
PDB file : Tito_Scwrl_3RM5.pdb: