Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRMHLPTLLKNKEKSQRSRQMSSSKTIGIIGGGQLGQMMAISAIYMGHKVIALDPAADCPASRVA-EIIVAPYNDVDALRQLADRCDVLTYEFENVDADGLDAVIK-DGQLPQGTDLLRISQNRIFEKDFLSNKSQVTVAPYKVVTSSLDLADI--DLSKNYVLKTATGGYDGHGQKVIRSEADLEAAYALAD--SADCVLEEFVNFDLEISVIVSGN-GKEVTFFPVQENIHRNNILSKTIVPARISESLVDKAKAMAVRIAEQLNLSGTLCVEMFATDDDVIVNEIAPRPHNSGHYSIEACDFSQFDTHILGVLGAPLPVIKLHAPAVMLNVLGQHVEAAEQYVTENSSAHLHMYGKIEAKHNRKMGHVTLFSDVPDSVDELGEGIDF
4MAM Chain:A ((1-356))------------------------MKIGIIGAGQLARMLSLAGTPLGLEFHCLGKNGDCAE-EVVKTVTDIELTKVNDVVAWAKQFDVITFENENISHELIKAINHEVSV-YPSAKAIAISQDRLLEKSFMQ-DHGIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDVLKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLARNTHKQGIIVESEAPF-ENVVLAEKAQQIAKILVKEFAYVGTLAIEFFVKGDELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGLILGDTTS-RKTVMLNCIGGMPA--TKDLAALDRVKIHSYNKE-PRKGRKVGHLNLNLNDETDE-YQLLQVK-


General information:
TITO was launched using:
RESULT:

Template: 4MAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2019 10660 5.28 30.54
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : 5.28
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.443

(partial model without unconserved sides chains):
PDB file : Tito_4MAM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4MAM-query.scw
PDB file : Tito_Scwrl_4MAM.pdb: