Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKALPIAVAVVLGGAALVPVYYATQHPTTEVGHKADKNASPIQKISYVLGYEVAQQTPPELDTKAFVQGIHDVRNKQPSAYTQEDLKAAVAAYEKELQQKMQHQDKPEQAGTATDSADAQFLAENKTKAGVKTTASGLQYIITKEGTGKQPTAQSIVKVHYEGRLINGQVFDSSYKRGQP--VEFPLNQVIPGWT-----------EGLQLMKEGGKATFFIPSNLAYGPQELPGIPA-NSTLIFDVELISVK
5HW8 Chain:B ((24-120))-------------------------------------------------------------------------------------------------------------------------------------------------------------VTIHYDGKLTNGKEFDSSRKRGKPFTCTVGVGQVIKGWDISLTNNYGKGGANLPKISKGTKAILTIPPNLAYGPRGIPGIIGPNETLVFEVELLGVN


General information:
TITO was launched using:
RESULT:

Template: 5HW8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 225 6528 29.01 78.65
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain B : 0.65

3D Compatibility (PKB) : 29.01
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.553

(partial model without unconserved sides chains):
PDB file : Tito_5HW8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5HW8-query.scw
PDB file : Tito_Scwrl_5HW8.pdb: