Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIYLDNAATTPMSAVAISAMTKVMQETHGNPSSIHGHGRQAGKLLREARQELAQLLRTKPQHIFFTSGGTEANNTTIIGYCLRHQ------EQGKHIITTAIEHHAVLETIDYLVQHFGFEATIIQPEN-Q-EITAQQIQKALRDDTILVSTMFANNETGNLLPIAEIGQILKQH----------PAAYHVDAVQAIGKIPIHSEELGIDFLTASAHKFHGPKGIGFLYASS-MDFDSYLH---GGDQEQKKRAGTENLPAIVGMVAALKENLEKQEEHFQHVQNLETAFLAELEGI-QYYLNRGK-----HHLPYVLNIGFPGQK------NDLLLLRLDLAGISISTGSACTAGVVQSSHVLEAMYGANSERLKESLRISLSPQNTVEDLQTLAKTLKEIIGG
3A9Z Chain:A ((19-426))KVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQ-TRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGP-RIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSP-----VLLS-CGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVN-


General information:
TITO was launched using:
RESULT:

Template: 3A9Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2001 28862 14.42 79.73
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain A : 0.73

3D Compatibility (PKB) : 14.42
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.541

(partial model without unconserved sides chains):
PDB file : Tito_3A9Z.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3A9Z-query.scw
PDB file : Tito_Scwrl_3A9Z.pdb: