Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRIILLGPPGAGKGTQAQLICKRYNIPQISTGDMLRAAIREGTELGLKAKSVMESGGLVSDELIIGLVKERIAQPDCVNGCIFDGFPRTIPQAEA----LEKEGISIDHVIEIDVPDEEIVKRLSGRRQHPASGRVYHVVYNPPKVEGKDDETGEDLVQRPDDQEETIRKRLASYHTETEQLVGFYQGRAASGENAPTYDKLDGLRTIEDVQKDLFNILDK
4JLD Chain:B ((1-202))MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNV---IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYR-QTAPLIEYYKKKG-------ILRIIDASKPVEEVYRQVLEVI--


General information:
TITO was launched using:
RESULT:

Template: 4JLD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 887 -38812 -43.76 -197.01
target 2D structure prediction score : 0.74
Monomeric hydrophicity matching model chain B : 0.86

3D Compatibility (PKB) : -43.76
2D Compatibility (Sec. Struct. Predict.) : 0.74
1D Compatibility (Hydrophobicity) : 0.86
QMean score : 0.549

(partial model without unconserved sides chains):
PDB file : Tito_4JLD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4JLD-query.scw
PDB file : Tito_Scwrl_4JLD.pdb: