Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQLISLPKQILQCGQLQLDLSQPHVMGILNVTPDSFSDGGKH--------NQLDQAVDHALSMIEQGATIIDIGGESTRPGASEVAVEEEVRRVVPVVEA------LSHHNVILSIDTSQPEVIRAAKAAGAHIWNDVRA-LTGPNALKTAVE-LDIPVVIMHMRGEPTTMNQLDQYTDVTL----------------------------DVMQELQQRIDEALAAGVKKHNIIVDPGFGFAKNAQQNLKLLKEFWKLNELGY----------------PILSGLSRKRFIGEALQGAPADQR--AVGSVTGHLLSIQQGASIVRAHDVKEMHEAILVWKAMQQA
2BMB Chain:A ((219-543))----------------RITVSPTYIMAIFNATPDSFSDGGEHFADIESQLNDIIKLCKDALYLHE--SVIIDVGGCSTRPNSIQASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRSNVAKEAIKVGVDIINDISGGLFDSNMFAVIAENPEICYILSHTRGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQLDDLKDKTVLIRNVGQEIGERYIKAIDNGVKRWQILIDPGLGFAKTWKQNLQIIRHIPILKNYSFTMNSNNSQVYVNLRNMPVLLGPSRKKFIGHITKDVDAKQRDFATGAVVASCIGF--GSDMVRVHDVKNCSKSIKLADAIYKG


General information:
TITO was launched using:
RESULT:

Template: 2BMB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1284 20686 16.11 78.65
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 0.79

3D Compatibility (PKB) : 16.11
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.481

(partial model without unconserved sides chains):
PDB file : Tito_2BMB.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2BMB-query.scw
PDB file : Tito_Scwrl_2BMB.pdb: