Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKERFQMKKYQWGIVGLGTIAHEFAESFNQE-TSELTAVASRTSEKAENFAHRYNIPKAYGSYQEMLDDAEIDIVYIAVPNRQHIDHILAALEAGKHVLCEKAITMNKKELADAMRLAEEKNLILAEAMTIFNMPLYQQLRSIMDTGKLGALKMIQAPFGSYKEPDPKNRFFNPELAGGALLDIGTYAVSFARFFLSSQPEVV-ASTMVPFETGVDEQSVTILRNKENELAAVSLTFQAKMPKVGIVAFENGYVTIADYPRADRAEILFTDGTKEFIESGN--TSEAMNYEIKNMVHMIEGDLP--N-RSLFLTKDVIEILDQMQVLWKNM
3E9M Chain:A ((1-319))------LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQEGGLGEILWVQSVTAYPN-VDHIPWFYSREAGGGALHGSGSYPLQYLQYVLGKEIQEVTGTATYQ-QGATDSQCNLALKFAEGTLGNIFINVGLKIPSEMTICGTKGQIVIPNFWKTDCAYYTDAQGN---TVKWSEQFTSEFTYEINHVNQCLQDKKLTSPVMTKELTIATVKIVESFYQEWFD-


General information:
TITO was launched using:
RESULT:

Template: 3E9M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1772 -64198 -36.23 -205.76
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : -36.23
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.499

(partial model without unconserved sides chains):
PDB file : Tito_3E9M.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3E9M-query.scw
PDB file : Tito_Scwrl_3E9M.pdb: