Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEFSKKTRELSIKKMQERTLDLLIIGGGITGAGVALQAAAS-GL-ETGLIEMQDFAEGTSSRSTKLVHGGLRYLKQFDVEVVSDTVSERAVVQQIAP--HIPKPDPMLLPVYDEDGATFSLFRLKVAMDLYDLLAGVSNTPTANKVLSKDQVLERQPNLKKEG-----LVGGGVY-LDFRNNDARLVIENIKRANQDGALIANHVKAEGFLFDESGKITGVVARDLLTDQVFEIKARLVINTTGPWSDKVRNLSNKGTQFSQMRPTKGVHLVVDSSKIKVSQPVYFDTGLGDGRMVFVLPRE-NKTYFGTTDTDYTGDLEHPKVTQEDVDYLLGIVNNRFPESNITIDDIESSWAGLRPLIAGNSASDYNGGNNGTISDESFDNLIATVESYLSKEKTREDVESAVSKLESSTSEKHLDPSAVSRGSSLDRDDNGLLTLAGGKITDYRKMGDEALWSAWLTSSKQNLTVALN
2GAG Chain:B ((15-335))------------NPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMARNTTIIRSNYLWD--ESAGIYEKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLGD-------VR---ESVRRVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTT----R--GTIHAGKVALAGAGHSSVLAEMAG---FELPIQSHPLQALVSELFEPVHPTVVMS-----NHIHVYVSQAHKGELVMGAGIDSYNG--YGQRGAFHVIQEQMAAAVELFPIF--ARAHVLRTWGGIVDTTMDA------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2GAG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1656 13434 8.11 43.34
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain B : 0.62

3D Compatibility (PKB) : 8.11
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.401

(partial model without unconserved sides chains):
PDB file : Tito_2GAG.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2GAG-query.scw
PDB file : Tito_Scwrl_2GAG.pdb: